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Open Access Publications from the University of California
Cover page of Back Matter

Back Matter

(1974)

[No abstract]

Cover page of Temperature-Dependent Water Oxidation Kinetics: Implications and Insights

Temperature-Dependent Water Oxidation Kinetics: Implications and Insights

(2025)

As a vital process for solar fuel synthesis, water oxidation remains a challenging reaction to perform using durable and cost-effective systems. Despite decades of intense research, our understanding of the detailed processes involved is still limited, particularly under photochemical conditions. Recent research has shown that the overall kinetics of water oxidation by a molecular dyad depends on the coordination between photocharge generation and the subsequent chemical steps. This work explores similar effects of heterogeneous solar water oxidation systems. By varying a key variable, the reaction temperature, we discovered distinctly different behaviors on two model systems, TiO2 and Fe2O3. TiO2 exhibited a monotonically increasing water oxidation performance with rising temperature across the entire applied potential range, between 0.1 and 1.5 V vs the reversible hydrogen electrode (RHE). In contrast, Fe2O3 showed increased performance with increasing temperature at high applied potentials (>1.2 V vs RHE) but decreased performance at low applied potentials (<1.2 V vs RHE). This decrease in performance with temperature on Fe2O3 was attributed to an increased level of electron-hole recombination, as confirmed by intensity-modulated photocurrent spectroscopy (IMPS). The origin of the differing temperature dependences on TiO2 and Fe2O3 was further ascribed to their different surface chemical kinetics. These results highlight the chemical nature of charge recombination in photoelectrochemical (PEC) systems, where surface electrons recombine with holes stored in surface chemical species. They also indicate that PEC kinetics are not constrained by a single rate-determining chemical step, highlighting the importance of an integrated approach to studying such systems. Moreover, the results suggest that for practical solar water splitting devices higher temperatures are not always beneficial for reaction rates, especially under low driving force conditions.

Cover page of Direct Observation of Morphological and Chemical Changes during the Oxidation of Model Inorganic Ligand-Capped Particles.

Direct Observation of Morphological and Chemical Changes during the Oxidation of Model Inorganic Ligand-Capped Particles.

(2025)

Functionalization and volatilization are competing reactions during the oxidation of carbonaceous materials and are important processes in many different areas of science and technology. Here, we present a combined ambient pressure X-ray photoelectron spectroscopy (APXPS) and grazing incidence X-ray scattering (GIXS) investigation of the oxidation of oleic acid ligands surrounding NaYF4 nanoparticles (NPs) deposited onto SiOx/Si substrates. While APXPS monitors the evolution of the oxidation products, GIXS provides insight into the morphology of the ligands and particles before and after the oxidation. Our investigation shows that the oxidation of the oleic acid ligands proceeds at O2 partial pressures of below 1 mbar in the presence of X-rays, with the oxidation eventually reaching a steady state in which mainly CHx and -COOH functional groups are observed. The scattering data reveal that the oxidation and volatilization reaction proceeds preferentially on the side of the particle facing the gas phase, leading to the formation of a chemically and morphologically asymmetric ligand layer. This comprehensive picture of the oxidation process could be obtained only by combining the X-ray scattering and APXPS data. The investigation presented here lays the foundation for further studies of the stability of NP layers in the presence of reactive trace gases and ionizing radiation and for other nanoscale systems where chemical and morphological changes happen simultaneously and cannot be understood in isolation.

Cover page of Surface Composition Impacts Selectivity of ZnTe Photocathodes in Photoelectrochemical CO2 Reduction Reaction

Surface Composition Impacts Selectivity of ZnTe Photocathodes in Photoelectrochemical CO2 Reduction Reaction

(2025)

Light-driven reduction of CO2 into chemicals using a photoelectrochemical (PEC) approach is considered as a promising way to meet the carbon neutral target. The very top surface of the photoelectrode and semiconductor/electrolyte interface plays a pivotal role in defining the performance for PEC CO2 reduction. However, such impact remains poorly understood. Here, we report an electrodeposition-annealing route for tailoring surface composition of ZnTe photocathodes. Our work demonstrates that a Zn-rich surface on the ZnTe photocathode is essential to impact the CO2 reduction activity and selectivity. In particular, the Zn-rich surface not only facilitated the interfacial charge carrier transfer, but also acted as electrocatalyst for boosting carbon product selectivity and suppressing the hydrogen evolution reaction. This work provides a new avenue to optimize the photocathode, as well as improvement of the CO2RR performance.

Cover page of A fully contained sample holder capable of electron-yield detection at soft X-ray energies.

A fully contained sample holder capable of electron-yield detection at soft X-ray energies.

(2025)

A holder has been developed that enables electron yield-detected soft X-ray spectroscopy of fully contained samples at low temperature. Crucially, this design uses elements of the sample containment to collect ejected electrons, removing the need to expose samples directly to the vacuum environment of the spectrometer. The design is modular and should be adaptable to a number of different endstation configurations, enabling spectroscopy of air-sensitive, radioactive and vacuum-sensitive (biological) samples.

Cover page of Mining for Potent Inhibitors through Artificial Intelligence and Physics: A Unified Methodology for Ligand Based and Structure Based Drug Design.

Mining for Potent Inhibitors through Artificial Intelligence and Physics: A Unified Methodology for Ligand Based and Structure Based Drug Design.

(2024)

Determining the viability of a new drug molecule is a time- and resource-intensive task that makes computer-aided assessments a vital approach to rapid drug discovery. Here we develop a machine learning algorithm, iMiner, that generates novel inhibitor molecules for target proteins by combining deep reinforcement learning with real-time 3D molecular docking using AutoDock Vina, thereby simultaneously creating chemical novelty while constraining molecules for shape and molecular compatibility with target active sites. Moreover, through the use of various types of reward functions, we have introduced novelty in generative tasks for new molecules such as chemical similarity to a target ligand, molecules grown from known protein bound fragments, and creation of molecules that enforce interactions with target residues in the protein active site. The iMiner algorithm is embedded in a composite workflow that filters out Pan-assay interference compounds, Lipinski rule violations, uncommon structures in medicinal chemistry, and poor synthetic accessibility with options for cross-validation against other docking scoring functions and automation of a molecular dynamics simulation to measure pose stability. We also allow users to define a set of rules for the structures they would like to exclude during the training process and postfiltering steps. Because our approach relies only on the structure of the target protein, iMiner can be easily adapted for the future development of other inhibitors or small molecule therapeutics of any target protein.

Cover page of Stabilization of reactive rare earth alkyl complexes through mechanistic studies

Stabilization of reactive rare earth alkyl complexes through mechanistic studies

(2024)

Rare earth tris(alkyl) complexes such as M(CH2SiMe3)3(sol) n are widely used as precursors for many compounds and as homogeneous catalysts for alkene polymerization and alkane functionalization. However, the thermal instability of those most conveniently made from the commercially available lithium salt of the neosilyl anion, LiCH2SiMe3, Li(r), restricts their utility. We present a new range of synthetically useful, more kinetically stable rare earth neosilyl solvates, derived from a full kinetic study of the various possible decomposition mechanisms of 7 known and 12 new solvated rare earth neosilyl complexes M(CH2SiMe3)3(sol) n M = Sc(iii), Y(iii), Lu(iii), Sm(iii), and sol = THF; TMEDA; DMPE; diglyme ((CH3)2(OCH2CH2)2O, G2), triglyme ((CH3)2(OCH2CH2)3O, G3). Surprisingly, simply using higher-denticity donors to sterically disfavor neosilyl γ-H elimination is not effective. While Sc(r)3((CH3)2(OCH2CH2)2O) has a half-life, t 1/2, of 258.1 h, six times longer than for Sc(r)3(C4H8O)2 (t 1/2 = 43 h), Lu(r)3((CH3)2(OCH2CH2)2O) and Y(r)3((CH3)2(OCH2CH2)2O) do not show the expected, analogous increased t 1/2. This is because new decomposition pathways appear for poorly fitting donors. Finally, kinetic studies demonstrate the impact of small, and increasing amounts of LiCl on the kinetics of the reactivity of the smaller alkyls Y(r)3(THF)2 and Lu(r)3(THF)2; molecules used in hydrocarbon chemistry and catalysis for fifty years. A new route to pure Y(r)3(THF)2, which avoids the traditional use of Li(r), is presented.

Cover page of Revisiting the Optical Spectrum of the Plutonyl Ion (PuO2)2+ in 1 M HClO4

Revisiting the Optical Spectrum of the Plutonyl Ion (PuO2)2+ in 1 M HClO4

(2024)

The analysis of the solution absorption spectrum of the plutonyl ion in an aqueous environment was given by Eisenstein and Pryce (E&P) in 1968. In 2011 a new spectrum was published of the (PuO2)2+ ion in 1 M HClO4. We have been provided with the original data of this spectrum and have found in the data a previously unreported low-lying transition at 7385 cm-1 which we have assigned as a magnetic dipole transition. We have fit most of the near-infrared and optical transitions with Gaussian fits and tabulated a new energy level list up to 22,000 cm-1 which mostly agrees with the data of E&P. We assumed a crystal field of D∞h (only axial symmetry) and utilized the intensity calculations published for the isoelectronic (NpO2)1+ ion using a complete basis set for the 5f2 problem including the Coulombic, spin-orbit as well as the crystal field Hamiltonian. Our results differ substantially from those of E&P. Subsequently, we used a truncated Hamiltonian to try to establish the effects of assuming the σ antibonding orbitals are at such high energies that we can ignore their contributions to the lower lying φ and δ orbitals.

Cover page of Intraoperative extracorporeal support for lung transplant: a systematic review and network meta-analysis.

Intraoperative extracorporeal support for lung transplant: a systematic review and network meta-analysis.

(2024)

BACKGROUND: In the last decades, veno-arterial extracorporeal membrane oxygenation (V-A ECMO) has been gaining in popularity for intraoperative support during lung transplant (LT), being advocated for routinely use also in uncomplicated cases. Compared to off-pump strategy and, secondarily, to traditional cardiopulmonary bypass (CPB), V-A ECMO seems to offer a better hemodynamic stability and oxygenation, while data regarding blood product transfusions, postoperative recovery, and mortality remain unclear. This systematic review and network meta-analysis aims to evaluate the comparative efficacy and safety of V-A ECMO and CPB as compared to OffPump strategy during LT. METHODS: A comprehensive literature search was conducted across multiple databases (PubMed Embase, Cochrane, Scopus) and was updated in February 2024. A Bayesian network meta-analysis (NMA), with a fixed-effect approach, was performed to compare outcomes, such as intraoperative needing of blood products, invasive mechanical ventilation (IMV) duration, intensive care unit (ICU) length of stay (LOS), surgical duration, needing of postoperative ECMO, and mortality, across different supports (i.e., intraoperative V-A (default (d) or rescue (r)) ECMO, CPB, or OffPump). FINDINGS: Twenty-seven observational studies (6113 patients) were included. As compared to OffPump surgery, V-A ECMOd, V-A ECMOr, and CPB recorded a higher consumption of all blood products, longer IMV durations, prolonged ICU LOS, surgical duration, and higher mortalities. Comparing different extracorporeal supports, V-A ECMOd and, secondarily, V-A ECMOr overperformed CPB in nearly all above mentioned outcomes, except for RBC transfusions. The lowest rate of postoperative ECMO was recorded after OffPump surgery, while no differences were found comparing different extracorporeal supports. Finally, older age, male gender, and body mass index ≥ 25 kg/m2 negatively impacted on RBC transfusions, ICU LOS, surgical duration, need of postoperative ECMO, and mortality, regardless of the intraoperative extracorporeal support investigated. INTERPRETATION: This comparative network meta-analysis highlights that OffPump overperformed ECMO and CPB in all outcomes of interest, while, comparing different extracorporeal supports, V-A ECMOd and, secondarily, V-A ECMOr overperformed CPB in nearly all above mentioned outcomes, except for RBC transfusions. Older age, male gender, and higher BMI negatively affect several outcomes across different intraoperative strategies, regardless of the intraoperative extracorporeal support investigated. Future prospective studies are necessary to optimize and standardize the intraoperative management of LT.

Cover page of High-precision chemical quantum sensing in flowing monodisperse microdroplets

High-precision chemical quantum sensing in flowing monodisperse microdroplets

(2024)

A method is presented for high-precision chemical detection that integrates quantum sensing with droplet microfluidics. Using nanodiamonds (ND) with fluorescent nitrogen-vacancy (NV) centers as quantum sensors, rapidly flowing microdroplets containing analyte molecules are analyzed. A noise-suppressed mode of optically detected magnetic resonance is enabled by pairing controllable flow with microwave control of NV electronic spins, to detect analyte-induced signals of a few hundredths of a percent of the ND fluorescence. Using this method, paramagnetic ions in droplets are detected with low limit-of-detection using small analyte volumes, with exceptional measurement stability over >103 s. In addition, these droplets are used as microconfinement chambers by co-encapsulating ND quantum sensors with various analytes such as single cells, suggesting wide-ranging applications including single-cell metabolomics and real-time intracellular measurements from bioreactors. Important advances are enabled by this work, including portable chemical testing devices, amplification-free chemical assays, and chemical imaging tools for probing reactions within microenvironments.