Recent Work
Parent: Microbiology and Plant Pathology
eScholarship stats: History by Item for December, 2024 through March, 2025
| Item | Title | Total requests | 2025-03 | 2025-02 | 2025-01 | 2024-12 |
|---|---|---|---|---|---|---|
| 71p5t489 | Shed Light in the DaRk LineagES of the Fungal Tree of Life—STRES | 452 | 120 | 107 | 104 | 121 |
| 8jh8v145 | A commensal-encoded genotoxin drives restriction of Vibrio cholerae colonization and host gut microbiome remodeling. | 238 | 5 | 227 | 4 | 2 |
| 2cp1n2cg | Toward a Fully Resolved Fungal Tree of Life | 156 | 34 | 33 | 46 | 43 |
| 68s498n4 | Small RNA-based antimicrobial immunity | 130 | 36 | 40 | 29 | 25 |
| 4485m01m | The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies | 124 | 33 | 29 | 36 | 26 |
| 98r4f90g | Cotton plants export microRNAs to inhibit virulence gene expression in a fungal pathogen | 113 | 38 | 38 | 20 | 17 |
| 5xh5w25b | Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses | 106 | 32 | 29 | 27 | 18 |
| 5059b0gm | Efficient CRISPR/Cas9-mediated genome modification of the glassy-winged sharpshooter Homalodisca vitripennis (Germar) | 82 | 17 | 21 | 26 | 18 |
| 6x297461 | A global metagenomic map of urban microbiomes and antimicrobial resistance | 81 | 31 | 20 | 19 | 11 |
| 3377b09t | DNA Geminivirus Infection Induces an Imprinted E3 Ligase Gene to Epigenetically Activate Viral Gene Transcription. | 76 | 14 | 21 | 23 | 18 |
| 0s0381bd | Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi | 75 | 14 | 22 | 18 | 21 |
| 0xz2n8zv | The genome of Geosiphon pyriformis reveals ancestral traits linked to the emergence of the arbuscular mycorrhizal symbiosis | 74 | 12 | 20 | 21 | 21 |
| 8731v0t7 | Antiviral RNA Silencing in Mammals: No News Is Not Good News | 71 | 18 | 16 | 22 | 15 |
| 44q9j286 | Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi | 69 | 14 | 19 | 22 | 14 |
| 2mv8b6ft | Symposium: What Does the Microbiome Tell Us about Prevention and Treatment of AD/ADRD? | 68 | 21 | 16 | 20 | 11 |
| 5pv0g71t | Transcriptional Analysis of Coccidioides immitis Mycelia and Spherules by RNA Sequencing | 65 | 18 | 14 | 16 | 17 |
| 5ps719v0 | Widespread adenine N6-methylation of active genes in fungi | 62 | 9 | 27 | 20 | 6 |
| 90k2q84m | Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions | 62 | 14 | 12 | 16 | 20 |
| 75q42017 | FungiDB: an integrated functional genomics database for fungi | 60 | 16 | 13 | 10 | 21 |
| 0f82g52x | Draft genome sequences for Neonectria magnoliae and Neonectria punicea, canker pathogens of Liriodendron tulipifera and Acer saccharum in West Virginia | 58 | 12 | 11 | 35 | |
| 86f967px | Class-wide genomic tendency throughout specific extremes in black fungi | 56 | 18 | 10 | 3 | 25 |
| 45d1k89k | RNAseq and targeted metabolomics implicate RIC8 in regulation of energy homeostasis, amino acid compartmentation, and asexual development in Neurospora crassa. | 55 | 11 | 7 | 13 | 24 |
| 38d0x4hb | Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi | 50 | 16 | 17 | 9 | 8 |
| 2b3817x3 | Fungal Morphogenesis, from the Polarized Growth of Hyphae to Complex Reproduction and Infection Structures | 49 | 10 | 19 | 12 | 8 |
| 3fm155t1 | Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota) | 49 | 10 | 11 | 13 | 15 |
| 9jf550w0 | An Immunocompetent Mouse Model of Zika Virus Infection. | 47 | 9 | 9 | 10 | 19 |
| 8kg3d133 | Rhinocladiella similis: A Model Eukaryotic Organism for Astrobiological Studies on Microbial Interactions with Martian Soil Analogs. | 46 | 18 | 28 | ||
| 25k8j699 | Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics | 45 | 22 | 9 | 11 | 3 |
| 39k4t8cq | Acetaminophen detoxification in cucumber plants via induction of glutathione S-transferases. | 44 | 12 | 13 | 10 | 9 |
| 1qs17737 | The future low-temperature geochemical data-scape as envisioned by the U.S. geochemical community | 42 | 3 | 26 | 7 | 6 |
| 76h9307w | Lessons from the Genome Sequence of Neurospora crassa: Tracing the Path from Genomic Blueprint to Multicellular Organism | 42 | 17 | 12 | 5 | 8 |
| 7503n0k8 | Environmental filtering by pH and soil nutrients drives community assembly in fungi at fine spatial scales | 41 | 15 | 8 | 7 | 11 |
| 4ms72153 | Effects of experimental nitrogen deposition on soil organic carbon storage in Southern California drylands | 40 | 8 | 11 | 9 | 12 |
| 7vh3f3p0 | The Interface of Vibrio cholerae and the Gut Microbiome | 39 | 8 | 12 | 9 | 10 |
| 3r94648v | Innate Immunity Evasion by Dengue Virus | 38 | 15 | 9 | 5 | 9 |
| 5cm7f9qg | Bifiguratus adelaidae, gen. et sp. nov., a new member of Mucoromycotina in endophytic and soil-dwelling habitats | 38 | 8 | 12 | 10 | 8 |
| 5bj6r10z | The future of fungi: threats and opportunities | 37 | 10 | 15 | 8 | 4 |
| 63q8c7ms | The genome of Geosiphon pyriformis reveals ancestral traits linked to the emergence of the arbuscular mycorrhizal symbiosis | 37 | 5 | 11 | 13 | 8 |
| 2r78m90g | Evolutionary histories of soil fungi are reflected in their large-scale biogeography | 35 | 6 | 11 | 5 | 13 |
| 18n5199r | Human antibodies targeting Zika virus NS1 provide protection against disease in a mouse model | 34 | 11 | 12 | 9 | 2 |
| 1vp001cg | Leaf-cutter ants - mycorrhizal fungi: observations and research questions from an unexpected mutualism. | 34 | 9 | 12 | 9 | 4 |
| 5f1159jc | Toward genome-enabled mycology | 34 | 10 | 10 | 8 | 6 |
| 6xr5x68f | Spray-Induced Gene Silencing: a Powerful Innovative Strategy for Crop Protection | 34 | 11 | 11 | 5 | 7 |
| 8v83t6ng | Extremophilic and extremotolerant fungi | 34 | 11 | 9 | 6 | 8 |
| 61k6n75t | Understudied, underrepresented, and unknown: Methodological biases that limit detection of early diverging fungi from environmental samples | 33 | 8 | 6 | 11 | 8 |
| 89c460tv | Belowground impacts of alpine woody encroachment are determined by plant traits, local climate, and soil conditions | 33 | 14 | 10 | 2 | 7 |
| 1z2724ft | Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned? | 32 | 4 | 14 | 6 | 8 |
| 4mp2h2n6 | Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi) | 32 | 6 | 19 | 2 | 5 |
| 6bg8c4tm | Peculiar genomic traits in the stress-adapted cryptoendolithic Antarctic fungus Friedmanniomyces endolithicus | 32 | 20 | 6 | 5 | 1 |
| 7tk1x1nr | Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex. | 32 | 10 | 8 | 12 | 2 |
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