Environ Genomics & Systems Bio

eScholarship stats: History by Item for October, 2024 through January, 2025

Item	Title	Total requests	2025-01	2024-12	2024-11	2024-10
57f5059w	Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly	354	102	63	85	104
9v80x6j2	Reduction of microbial diversity in grassland soil is driven by long-term climate warming	330	63	80	79	108
71p5t489	Shed Light in the DaRk LineagES of the Fungal Tree of Life—STRES	266	104	121	8	33
7956s6h6	The Human Phenotype Ontology in 2024: phenotypes around the world	235	56	55	44	80
53j5t3m7	Phage therapy: From biological mechanisms to future directions	118	36	36	17	29
0qq0q564	Genomic Features and Pervasive Negative Selection in Rhodanobacter Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer	110	25	22	16	47
1fx8882v	Methods for obtaining and analyzing whole chloroplast genome sequences	110	27	31	23	29
1hg5v2pg	Metagenomics: DNA sequencing of environmental samples	107	27	26	29	25
6p94q2rz	A roadmap for the functional annotation of protein families: a community perspective	107	31	16	20	40
2310v0bv	Vision, challenges and opportunities for a Plant Cell Atlas	106	29	23	24	30
2ms9t9qn	The sequence and analysis of duplication rich human chromosome 16	106	32	27	24	23
5630v7q7	Systematic mapping of chromatin state landscapes during mouse development	106	103	2		1
3z44x6vv	Enhancer redundancy provides phenotypic robustness in mammalian development	104	30	26	20	28
3dc7454j	The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants	103	28	27	25	23
23x7d9r0	Environmental genomics reveals a single species ecosystem deep within the Earth	98	25	18	25	30
9xj0x028	The mole genome reveals regulatory rearrangements associated with adaptive intersexuality	98	27	23	24	24
5139201v	RNA-guided genome engineering: paradigm shift towards transposons	95	22	51	12	10
5zf5q22w	Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science	95	23	28	16	28
2x09q87j	Author Correction: Perspectives on ENCODE	94	24	22	23	25
63h612dp	Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium	92	21	22	19	30
0nm5z1jj	Capturing the genetic makeup of the active microbiome in situ	91	20	25	19	27
1cr3x9zb	BioHackathon 2015: Semantics of data for life sciences and reproducible research	90	27	26	11	26
8r59w8v4	Engineered bacterial microcompartments: apps for programming metabolism	89	20	26	12	31
36g6n553	A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism	88	24	28	13	23
6k58j505	Cytoplasmic Phytochrome Action	88	27	25	17	19
1z34b690	FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments	87	11	27	22	27
6537f8bf	Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle	87	19	22	24	22
69k4b0sr	Machine-Learning Functional Zonation Approach for Characterizing Terrestrial–Aquatic Interfaces: Application to Lake Erie	87	23	29	16	19
2z5184j0	Comparing in planta accumulation with microbial routes to set targets for a cost-competitive bioeconomy	86	24	20	18	24
2zk8j1fx	Genome-wide fetalization of enhancer architecture in heart disease	86	20	22	18	26
69z6h6mx	Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?	86	25	22	19	20
5691r72p	Decrypting bacterial polyphenol metabolism in an anoxic wetland soil	85	23	21	13	28
9h33q1m0	EcoPLOT: dynamic analysis of biogeochemical data	85	27	17	19	22
1334t58v	Disease model discovery from 3,328 gene knockouts by The International Mouse Phenotyping Consortium	83	26	21	11	25
1j5679dd	A renaissance for the pioneering 16S rRNA gene	83	19	24	25	15
57h497xp	Thousands of small, novel genes predicted in global phage genomes	83	18	15	21	29
9cg336t7	Topologically Associating Domain Boundaries are Commonly Required for Normal Genome Function	83	19	24	18	22
6ck6m0x4	Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice	82	19	21	15	27
24q5m38w	The amphioxus genome and the evolution of the chordate karyotype	81	27	22	10	22
3x9230gv	Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community	80	23	19	16	22
49r9025s	Clades of huge phages from across Earth’s ecosystems	80	19	20	18	23
5f12w14d	BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data	80	23	22	14	21
7347s5hq	The Structural Basis of Coenzyme A Recycling in a Bacterial Organelle	80	21	23	16	20
9md902bg	Bulk phase resource ratio alters carbon steel corrosion rates and endogenously produced extracellular electron transfer mediators in a sulfate-reducing biofilm	79	20	22	13	24
8gf377mr	Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons	77	20	14	18	25
2jr9b550	Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies	76	24	22	10	20
0636v49k	Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability	75	16	23	16	20
1x47n0rr	Telepresence is a potentially transformative tool for field science	75	15	22	15	23
9fc4d66p	Phased diploid genome assembly with single-molecule real-time sequencing.	73	26	17	12	18
5464m4kf	Comparative metagenomics reveals impact of contaminants on groundwater microbiomes	71	16	20	15	20

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