BioSciences

Parent: Lawrence Berkeley National Laboratory

eScholarship stats: Breakdown by Item for November, 2024 through February, 2025

Item	Title	Total requests	Download	View-only	%Dnld
1h3515gn	BBMap: A Fast, Accurate, Splice-Aware Aligner	701	92	609	13.1%
57f5059w	Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly	379	117	262	30.9%
71p5t489	Shed Light in the DaRk LineagES of the Fungal Tree of Life—STRES	340	327	13	96.2%
22k9d6k9	Phytozome Comparative Plant Genomics Portal	328	9	319	2.7%
9v80x6j2	Reduction of microbial diversity in grassland soil is driven by long-term climate warming	302	246	56	81.5%
5n75t404	Pre-metastatic niches: organ-specific homes for metastases	231	69	162	29.9%
1xt5762k	Improving photosynthesis and crop productivity by accelerating recovery from photoprotection	227	134	93	59.0%
7956s6h6	The Human Phenotype Ontology in 2024: phenotypes around the world	197	79	118	40.1%
25s902m0	Microbial production of advanced biofuels	188	146	42	77.7%
6r99w1b4	Complete biosynthesis of cannabinoids and their unnatural analogues in yeast	167	103	64	61.7%
4p25j4tm	Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts	166	73	93	44.0%
7vh845wn	MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes	166	137	29	82.5%
91c7c0t1	Thirdhand smoke exposure promotes gastric tumor development in mouse and human	160	3	157	1.9%
8rk2x6pj	A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome	155	129	26	83.2%
9d4221mc	De novo DNA synthesis using polymerase-nucleotide conjugates	153	68	85	44.4%
1r25188f	Fungal Transcriptomics	139	121	18	87.1%
1zx113n5	CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length.	139	3	136	2.2%
3n13f2pf	Two decades of bacterial ecology and evolution in a freshwater lake	138	90	48	65.2%
4zh090xt	Uncovering Earth’s virome	135	52	83	38.5%
53j5t3m7	Phage therapy: From biological mechanisms to future directions	134	113	21	84.3%
1fx8882v	Methods for obtaining and analyzing whole chloroplast genome sequences	124	9	115	7.3%
9033s7sx	Novel bacterial clade reveals origin of form I Rubisco	123	20	103	16.3%
7n8428f3	Genome resources for three modern cotton lines guide future breeding efforts.	121	9	112	7.4%
0r48g3rc	Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments	119	15	104	12.6%
44p4p26z	The impact of reducing signal acquisition specifications on neuronal spike sorting	117	32	85	27.4%
3z44x6vv	Enhancer redundancy provides phenotypic robustness in mammalian development	116	24	92	20.7%
1hg5v2pg	Metagenomics: DNA sequencing of environmental samples	115	41	74	35.7%
2ms9t9qn	The sequence and analysis of duplication rich human chromosome 16	114	15	99	13.2%
3dc7454j	The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants	112	8	104	7.1%
5f61j05m	XANES and EXAFS of dilute solutions of transition metals at XFELs	112	4	108	3.6%
4369p87c	Methane to bioproducts: unraveling the potential of methanotrophs for biomanufacturing	111	14	97	12.6%
8690m3jt	Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes	110	24	86	21.8%
5630v7q7	Systematic mapping of chromatin state landscapes during mouse development	109	0	109	0.0%
6nn6p8db	Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis	109	97	12	89.0%
7kt417cw	Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil	109	2	107	1.8%
0wp465kn	MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies	108	29	79	26.9%
2310v0bv	Vision, challenges and opportunities for a Plant Cell Atlas	108	26	82	24.1%
18v6h17b	Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks	107	42	65	39.3%
2ct9j9m4	Real-time bioelectronic sensing of environmental contaminants	106	73	33	68.9%
44v0c3r5	Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.	106	29	77	27.4%
5663x783	Microbes and Climate Change: a Research Prospectus for the Future	106	73	33	68.9%
0ms113jv	Engineered Production of Short-Chain Acyl-Coenzyme A Esters in Saccharomyces cerevisiae	105	15	90	14.3%
3k8311t2	Mapping genome-wide transcription-factor binding sites using DAP-seq	105	2	103	1.9%
3x71c44w	The network makeup artist (NORMA-2.0): distinguishing annotated groups in a network using innovative layout strategies.	104	3	101	2.9%
5139201v	RNA-guided genome engineering: paradigm shift towards transposons	104	27	77	26.0%
69z6h6mx	Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?	102	72	30	70.6%
9pm0x5mh	Machine learning for metabolic engineering: A review	102	59	43	57.8%
9xj0x028	The mole genome reveals regulatory rearrangements associated with adaptive intersexuality	102	22	80	21.6%
6p94q2rz	A roadmap for the functional annotation of protein families: a community perspective	101	16	85	15.8%
90w6c49d	Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris	101	48	53	47.5%

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