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CellWalkR: an R package for integrating and visualizing single-cell and bulk data to resolve regulatory elements
- Przytycki, Pawel F;
- Pollard, Katherine S
- Editor(s): Marschall, Tobias
Published Web Location
https://doi.org/10.1093/bioinformatics/btac150No data is associated with this publication.
Abstract
Summary
CellWalkR is an R package that integrates single-cell open chromatin data with cell type labels and bulk epigenetic data to identify cell type-specific regulatory regions. A Graphics Processing Unit (GPU) implementation and downsampling strategies enable thousands of cells to be processed in seconds. CellWalkR's user-friendly interface provides interactive analysis and visualization of cell labels and regulatory region mappings.Availability and implementation
CellWalkR is freely available as an R package under a GNU GPL-2.0 License and can be accessed from https://github.com/PFPrzytycki/CellWalkR with an accompanying vignette.Supplementary information
Supplementary data are available at Bioinformatics online.Many UC-authored scholarly publications are freely available on this site because of the UC's open access policies. Let us know how this access is important for you.