The small Indian mongoose is an invasive pest species and rabies reservoir in Puerto Rico and other islands in the Caribbean. In the United States and Europe, rabies in wild carnivores is largely controlled through oral rabies vaccination (ORV), but no ORV program for mongooses exists. The oral rabies vaccine currently licensed for use in wild carnivores in the United States has not been reported as immunogenic for mongooses. A mongoose-specific bait has been developed but field-based bait flavor preference trials have not been performed in Puerto Rico. We evaluated removal of egg-flavored (treatment) vs. unflavored (control), water-filled placebo ORV baits in a subtropical dry forest in southwestern Puerto Rico from 2014-2015. During six trials at four plots we distributed 350 baits (175 treatment and 175 control) and monitored baits for five days or until at least 50% of baits had been removed or were rendered unavailable to mongooses due to inundation by fire ants. The estimated overall probability of bait removal within five days was 85% (95% CI 75-91%) and 45% (95% CI 35-55%) for treatment and control baits, respectively. Removal rate estimates in the spring were 95% (95% CI 86-98%) and 63% (95% CI 49-76%) for treatment and control baits, respectively. Removal rate estimates in autumn were 68% (95% CI 58-77%) and 30% (95% CI 22-39%) for treatment and controls, respectively. Model estimates suggest that treatment and season were more influential on bait removal rates than diel period or experimental day, although bait removal rates were higher at night than during the day, suggesting non-target bait removal by nocturnal rodents. Our results suggest that egg-flavored baits were preferred by mongooses over unflavored baits. During operational ORV bait application, non-target bait removal should be taken into consideration when calculating bait application rates.