- Mathewson, Nathan D;
- Ashenberg, Orr;
- Tirosh, Itay;
- Gritsch, Simon;
- Perez, Elizabeth M;
- Marx, Sascha;
- Jerby-Arnon, Livnat;
- Chanoch-Myers, Rony;
- Hara, Toshiro;
- Richman, Alyssa R;
- Ito, Yoshinaga;
- Pyrdol, Jason;
- Friedrich, Mirco;
- Schumann, Kathrin;
- Poitras, Michael J;
- Gokhale, Prafulla C;
- Gonzalez Castro, L Nicolas;
- Shore, Marni E;
- Hebert, Christine M;
- Shaw, Brian;
- Cahill, Heather L;
- Drummond, Matthew;
- Zhang, Wubing;
- Olawoyin, Olamide;
- Wakimoto, Hiroaki;
- Rozenblatt-Rosen, Orit;
- Brastianos, Priscilla K;
- Liu, X Shirley;
- Jones, Pamela S;
- Cahill, Daniel P;
- Frosch, Matthew P;
- Louis, David N;
- Freeman, Gordon J;
- Ligon, Keith L;
- Marson, Alexander;
- Chiocca, E Antonio;
- Reardon, David A;
- Regev, Aviv;
- Suvà, Mario L;
- Wucherpfennig, Kai W
T cells are critical effectors of cancer immunotherapies, but little is known about their gene expression programs in diffuse gliomas. Here, we leverage single-cell RNA sequencing (RNA-seq) to chart the gene expression and clonal landscape of tumor-infiltrating T cells across 31 patients with isocitrate dehydrogenase (IDH) wild-type glioblastoma and IDH mutant glioma. We identify potential effectors of anti-tumor immunity in subsets of T cells that co-express cytotoxic programs and several natural killer (NK) cell genes. Analysis of clonally expanded tumor-infiltrating T cells further identifies the NK gene KLRB1 (encoding CD161) as a candidate inhibitory receptor. Accordingly, genetic inactivation of KLRB1 or antibody-mediated CD161 blockade enhances T cell-mediated killing of glioma cells in vitro and their anti-tumor function in vivo. KLRB1 and its associated transcriptional program are also expressed by substantial T cell populations in other human cancers. Our work provides an atlas of T cells in gliomas and highlights CD161 and other NK cell receptors as immunotherapy targets.