- Flanagan, Kevin;
- Earls, Jon;
- Schillebeeckx, Ian;
- Hiken, Jeffrey;
- Wellinghoff, Rachel;
- LaFranzo, Natalie;
- Bradley, Zachary;
- Babbitt, Joey;
- Westra, William;
- Hsu, Raymond;
- Nadauld, Lincoln;
- Mcleod, Howard;
- Firth, Sean;
- Sharp, Brittany;
- Fuller, Josh;
- Vavinskaya, Vera;
- Sutton, Leisa;
- Deichaite, Ida;
- Bailey, Samuel;
- Sandulache, Vlad;
- Rendo, Matthew;
- Macdonald, Orlan;
- Welaya, Karim;
- Wade, James;
- Pippas, Andrew;
- Slim, Jennifer;
- Bank, Bruce;
- Saccaro, Steven;
- Sui, Xingwei;
- Akhtar, Adil;
- Balaraman, Savitha;
- Kossman, Steven;
- Sonnier, Scott;
- Shenkenberg, Todd;
- Alexander, Warren;
- Price, Katherine;
- Bane, Charles;
- Ley, Jessica;
- Messina, David;
- Glasscock, Jarret;
- Adkins, Douglas;
- Duncavage, Eric;
- Cohen, Ezra
PURPOSE: Anti-PD-1 therapy provides clinical benefit in 40-50% of patients with relapsed and/or metastatic head and neck squamous cell carcinoma (RM-HNSCC). Selection of anti- PD-1 therapy is typically based on patient PD-L1 immunohistochemistry (IHC) which has low specificity for predicting disease control. Therefore, there is a critical need for a clinical biomarker that will predict clinical benefit to anti-PD-1 treatment with high specificity. METHODS: Clinical treatment and outcomes data for 103 RM-HNSCC patients were paired with RNA-sequencing data from formalin-fixed patient samples. Using logistic regression methods, we developed a novel biomarker classifier based on expression patterns in the tumor immune microenvironment to predict disease control with monotherapy PD-1 inhibitors (pembrolizumab and nivolumab). The performance of the biomarker was internally validated using out-of-bag methods. RESULTS: The biomarker significantly predicted disease control (65% in predicted non-progressors vs. 17% in predicted progressors, p < 0.001) and was significantly correlated with overall survival (OS; p = 0.004). In addition, the biomarker outperformed PD-L1 IHC across numerous metrics including sensitivity (0.79 vs 0.64, respectively; p = 0.005) and specificity (0.70 vs 0.61, respectively; p = 0.009). CONCLUSION: This novel assay uses tumor immune microenvironment expression data to predict disease control and OS with high sensitivity and specificity in patients with RM-HNSCC treated with anti-PD-1 monotherapy.