- Stergachis, Andrew;
- Blue, Elizabeth;
- Gillentine, Madelyn;
- Wang, Lee-Kai;
- Schwarze, Ulrike;
- Cortés, Adriana;
- Ranchalis, Jane;
- Allworth, Aimee;
- Bland, Austin;
- Chanprasert, Sirisak;
- Chen, Jingheng;
- Doherty, Daniel;
- Folta, Andrew;
- Glass, Ian;
- Horike-Pyne, Martha;
- Huang, Alden;
- Khan, Alyna;
- Leppig, Kathleen;
- Miller, Danny;
- Mirzaa, Ghayda;
- Parhin, Azma;
- Raskind, Wendy;
- Rosenthal, Elisabeth;
- Sheppeard, Sam;
- Strohbehn, Samuel;
- Sybert, Virginia;
- Tran, Thao;
- Wener, Mark;
- Byers, Peter;
- Nelson, Stanley;
- Bamshad, Michael;
- Dipple, Katrina;
- Jarvik, Gail;
- Hoppins, Suzanne;
- Hisama, Fuki
OBJECTIVES: Transcript sequencing of patient-derived samples has been shown to improve the diagnostic yield for solving cases of suspected Mendelian conditions, yet the added benefit of full-length long-read transcript sequencing is largely unexplored. METHODS: We applied short-read and full-length transcript sequencing and mitochondrial functional studies to a patient-derived fibroblast cell line from an individual with neuropathy that previously lacked a molecular diagnosis. RESULTS: We identified an intronic homozygous MFN2 c.600-31T>G variant that disrupts the branch point critical for intron 6 splicing. Full-length long-read isoform complementary DNA (cDNA) sequencing after treatment with a nonsense-mediated mRNA decay (NMD) inhibitor revealed that this variant creates 5 distinct altered splicing transcripts. All 5 altered splicing transcripts have disrupted open reading frames and are subject to NMD. Furthermore, a patient-derived fibroblast line demonstrated abnormal lipid droplet formation, consistent with MFN2 dysfunction. Although correctly spliced full-length MFN2 transcripts are still produced, this branch point variant results in deficient MFN2 levels and autosomal recessive Charcot-Marie-Tooth disease, axonal, type 2A (CMT2A). DISCUSSION: This case highlights the utility of full-length isoform sequencing for characterizing the molecular mechanism of undiagnosed rare diseases and expands our understanding of the genetic basis for CMT2A.