Carbon accumulation in coastal wetlands is normally assessed by extracting a sediment core and estimating its carbon content and bulk density. Because carbon content and bulk density are functionally related, the latter can be estimated gravimetrically from a section of the core or, alternatively, from the carbon content in the sample using the mixing model equation from soil science. Using sediment samples from La Paz Bay, Mexico, we analyzed the effect that the choice of corer and the method used to estimate bulk density could have on the final estimates of carbon storage in the sediments. We validated the results using a larger dataset of tropical mangroves, and then by Monte Carlo simulation. The choice of corer did not have sizable influence on the final estimates of carbon density. The main factor in selecting a corer is the operational difficulties that each corer may have in different types of sediments. Because of the multiplication of errors in a product of two variables subject to random sampling error, when using gravimetric estimates of bulk density, the dispersion of the data points in the estimation of total carbon density rises rapidly as the amount of carbon in the sediment increases. In contrast, the estimation of total carbon density using only the carbon fraction as a predictor is very precise, especially in sediments rich in organic matter. This method, however, depends critically on the accurate estimation of the two parameters of the mixing model: the bulk density of pure peat and the bulk density of pure mineral sediment. The estimation of carbon densities in peaty sediments can be very imprecise when using gravimetric bulk densities. Estimating carbon density in peaty sediments using only the estimate of organic fraction can be much more precise, provided the model parameters are estimated with accuracy. These results open the door for simplified and precise estimates of carbon dynamics in mangroves and coastal wetlands.

Given their relatively small area, mangroves and their organic sediments are of disproportionate importance to global carbon sequestration and carbon storage. Peat deposition and preservation allows some mangroves to accrete vertically and keep pace with sea-level rise by growing on their own root remains. In this study we show that mangroves in desert inlets in the coasts of the Baja California have been accumulating root peat for nearly 2,000 y and harbor a belowground carbon content of 900-34,00 Mg C/ha, with an average value of 1,130 (± 128) Mg C/ha, and a belowground carbon accumulation similar to that found under some of the tallest tropical mangroves in the Mexican Pacific coast. The depth-age curve for the mangrove sediments of Baja California indicates that sea level in the peninsula has been rising at a mean rate of 0.70 mm/y (± 0.07) during the last 17 centuries, a value similar to the rates of sea-level rise estimated for the Caribbean during a comparable period. By accreting on their own accumulated peat, these desert mangroves store large amounts of carbon in their sediments. We estimate that mangroves and halophyte scrubs in Mexico's arid northwest, with less than 1% of the terrestrial area, store in their belowground sediments around 28% of the total belowground carbon pool of the whole region.

Mangrove ecosystems provide important ecological benefits and ecosystem services, including carbon storage and coastline stabilization, but they also suffer great anthropogenic pressures. Microorganisms associated with mangrove sediments and the rhizosphere play key roles in this ecosystem and make essential contributions to its productivity and carbon budget. Understanding this nexus and moving from descriptive studies of microbial taxonomy to hypothesis-driven field and lab studies will facilitate a mechanistic understanding of mangrove ecosystem interaction webs and open opportunities for microorganism-mediated approaches to mangrove protection and rehabilitation. Such an effort calls for a multidisciplinary and collaborative approach, involving chemists, ecologists, evolutionary biologists, microbiologists, oceanographers, plant scientists, conservation biologists, and stakeholders, and it requires standardized methods to support reproducible experiments. Here, we outline the Mangrove Microbiome Initiative, which is focused around three urgent priorities and three approaches for advancing mangrove microbiome research.